Cluster T1769 (T4-like endonuclease, Viral)


  • General information
  • Line-Islands recruitment
  • Sequence similarity
  • Proxy proteins
  • COGs
  • Neighboring clusters

  • General information

    Size26
    Core clustersC4512 
    Gene FASTA fileT1769.genes.fasta
    Peptides FASTA fileT1769.peptides.fasta
    GFF fileT1769.gff
    CommentsWarning: cluster T2684 has the same description with different tagging (VM)

    Line-Islands recruitment

    SampleNo recruited readsOne or more recruited readsAvg. recruitment for scafs with recruitment
    Viral3 (11.53%)23 (88.46%)44.45
    Microbial23 (88.46%)3 (11.53%)5.06

    What's this?

    Sequence similarity statistics

    Cluster members% identity of best hits
    with no hitswith hitsAverageMinimumMaximum
    VirMic:Viral0 (0%)26 (100%)77.5544.54100
    Proxy proteins0 (0%)26 (100%)62.6732.4383.05

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    Proxy proteins

    ProteinOccurencesDescription
    gi|61806017|ref|YP_214377.1|26 (100%)T4-like endonuclease

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    COGs

    COGOccurencesDescription
    COG04202 (7.69%)DNA repair exonuclease
    N/A24 (92.3%)

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    Neighboring clusters on the same scaffolds

    ClusterNumberTagDescription
    T203713VT4-like sigma factor, late transcription
    T26848VMT4-like endonuclease
    T30128VMhypothetical protein PSSM2_146
    T32615VMUvsW
    T4385Mhypothetical protein RS9916_38307
    T15965Vhypothetical protein PSSM2_143
    T6035MNADH dehydrogenase subunit I
    T1283Mpeptide deformylase
    T1802Mhypothetical protein Pro0940
    T8872Mhypothetical protein P9515_17921
    T13301Mhypothetical protein SynRCC307_0136
    T1901Mhypothetical protein pnf11100
    T34011VMBcepGomrgp34
    T21461Vsigma factor for late transcription gp55
    T12411Mhypothetical protein Mext_0157
    T29601VMmannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
    T4191Mhypothetical protein Mext_0158
    T28611VMrecombination endonuclease
    T5651Mhypothetical protein P9515_16571
    T19381Vhypothetical protein PSSM4_008
    T9421Mcytidylyltransferase
    T18751Vhypothetical protein PSSM2_222
    T18971Vgp5

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