Cluster T2642 (photosystem II D2 protein, Viral-Microbial)


  • General information
  • Line-Islands recruitment
  • Sequence similarity
  • Proxy proteins
  • COGs
  • Neighboring clusters

  • General information

    Size78
    Core clustersC276 
    Gene FASTA fileT2642.genes.fasta
    Peptides FASTA fileT2642.peptides.fasta
    GFF fileT2642.gff
    Comments

    Line-Islands recruitment

    SampleNo recruited readsOne or more recruited readsAvg. recruitment for scafs with recruitment
    Viral8 (10.25%)70 (89.74%)25.12
    Microbial62 (79.48%)16 (20.51%)4.9

    What's this?

    Sequence similarity statistics

    Cluster members% identity of best hits
    with no hitswith hitsAverageMinimumMaximum
    VirMic:Viral_Microbial0 (0%)78 (100%)97.3684.58100
    Proxy proteins0 (0%)78 (100%)94.4675.47100

    What's this?

    Proxy proteins

    ProteinOccurencesDescription
    gi|113200723|ref|YP_717887.1|59 (75.64%)photosystem II D2 protein
    gi|58532991|ref|YP_195214.1|9 (11.53%)photosystem II D2 protein
    gi|61806388|ref|YP_214747.1|4 (5.12%)D2
    gi|126696687|ref|YP_001091573.1|3 (3.84%)photosystem II PsbD protein (D2)
    gi|116071488|ref|ZP_01468756.1|2 (2.56%)Photosystem II reaction centre protein PsbD/D2
    gi|116073923|ref|ZP_01471185.1|1 (1.28%)photosystem II D2 protein

    What's this?

    COGs

    COGOccurencesDescription
    N/A78 (100%)

    What's this?

    Neighboring clusters on the same scaffolds

    ClusterNumberTagDescription
    T134130Mhypothetical protein BL107_15590
    T291126VMphotosystem II D1 protein
    T277919VMTalC
    T140418Mhypothetical protein Pro0463
    T191714Vgp217
    T255811VMpossible endonuclease
    T16029Vphage tail fiber-like protein
    T32289VMhypothetical protein BL107_15585
    T29258VMplastocyanin
    T19747Vhypothetical protein PSSM2_282
    T6626Mhypothetical protein Syncc9605_1608
    T16375Vgp134
    T17915Vhypothetical protein P60_44
    T31305VMferredoxin
    T18095Vhypothetical protein S-PM2p008
    T12544Mhypothetical protein WH5701_10639
    T904Mphosphoribosylaminoimidazole-succinocarboxamide synthase
    T25733VMglutaredoxin
    T172Mmembrane protein
    T16412Vgp222
    T16292Vhypothetical protein PSSM4_190
    T17192Vhypothetical protein PSSM4_142
    T18102Vgp181
    T14102Mhypothetical protein sync_1816
    T31111VMhypothetical protein MXAN_6740
    T33851VMhypothetical protein Bpro_2642
    T15761Mhypothetical protein NATL1_07631
    T34201VMcyanobacterial phosphoribosylglycinamide formyltransferase
    T11961Mhypothetical protein Tery_2255
    T12571MDnaB-like helicase
    T33311VMglucose 6-phosphate dehydrogenase
    T24021VMhypothetical protein PSSM2_057
    T32881VM6-phosphogluconate dehydrogenase
    T20361Vgp224
    T401Mmembrane-anchored cell surface protein
    T19571Vgp149
    T30991VMhypothetical protein Synpcc7942_0668
    T17591Vglutaredoxin
    T22741Vhypothetical protein PSSM4_187
    T7961Mprobable extracellular nuclease
    T3321Mhypothetical protein AM1_6399
    T17321Vgp179
    T15351Mhypothetical protein SynWH7803_0825
    T18941Vgp116
    T3121Mhypothetical protein Dalk_2239
    T12801MHep_Hag family protein
    T10401Mputative phosphoribosylaminoimidazole-succinocarboxamide synthetase
    T1291Mouter membrane autotransporter barrel domain protein
    T35121VMgp214
    T20451Vgp167
    T31821VMphosphoribosylglycinamide formyltransferase
    T21301Vhypothetical protein PSSM2_241
    T25331VMImmunoglobulin I-set domain protein
    T19841VI-TevII homing endonuclease
    T1101Mouter membrane autotransporter
    T101Mhypothetical protein Cyan8802DRAFT_2027
    T24901VMNrdC
    T13781Mribosomal protein S6 modification protein, putative
    T20811Vhypothetical protein S-PM2p013
    T30321VMtryptophan halogenase
    T20871Vhypothetical protein S-PM2p218
    T2361Mhypothetical protein OA2633_08569

    What's this?