Cluster T603 (NAD(P)H-dehydrogenase subunit I, Microbial)


  • General information
  • Line-Islands recruitment
  • Sequence similarity
  • Proxy proteins
  • COGs
  • Neighboring clusters

  • General information

    Size13
    Core clustersC437 
    Gene FASTA fileT603.genes.fasta
    Peptides FASTA fileT603.peptides.fasta
    GFF fileT603.gff
    Comments

    Line-Islands recruitment

    SampleNo recruited readsOne or more recruited readsAvg. recruitment for scafs with recruitment
    Viral0 (0%)13 (100%)56.78
    Microbial11 (84.61%)2 (15.38%)6.1

    What's this?

    Sequence similarity statistics

    Cluster members% identity of best hits
    with no hitswith hitsAverageMinimumMaximum
    VirMic:Microbial0 (0%)13 (100%)92.0886.15100
    Proxy proteins0 (0%)13 (100%)83.627588.26

    What's this?

    Proxy proteins

    ProteinOccurencesDescription
    gi|123965423|ref|YP_001010504.1|4 (30.76%)NADH dehydrogenase subunit I
    gi|126695517|ref|YP_001090403.1|3 (23.07%)NADH dehydrogenase subunit I
    gi|33864284|ref|NP_895844.1|2 (15.38%)NADH dehydrogenase subunit I
    gi|33860719|ref|NP_892280.1|1 (7.69%)NADH dehydrogenase subunit I
    gi|124024377|ref|YP_001018684.1|1 (7.69%)NADH dehydrogenase subunit I
    gi|33239635|ref|NP_874577.1|1 (7.69%)NADH dehydrogenase subunit I
    gi|124024945|ref|YP_001014061.1|1 (7.69%)NADH dehydrogenase subunit I

    What's this?

    COGs

    COGOccurencesDescription
    COG114313 (100%)Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)

    What's this?

    Neighboring clusters on the same scaffolds

    ClusterNumberTagDescription
    T17695VT4-like endonuclease
    T20374VT4-like sigma factor, late transcription
    T21313Vhypothetical protein PSSM2_251
    T2043Mphotosystem I reaction center subunit IX
    T27893VMhypothetical protein PSSM2_253
    T32612VMUvsW
    T29052VMhypothetical protein PSSM2_167
    T20552Vhypothetical protein PSSM2_227
    T18602Vhypothetical protein PSSM2_290
    T15962Vhypothetical protein PSSM2_143
    T21272Vhypothetical protein PSSM4_137
    T30122VMhypothetical protein PSSM2_146
    T26112VMhypothetical protein PSSM4_099
    T30301VMgp136
    T16351Vhypothetical protein PSSM2_250
    T28451VMABC-type phosphate transport system, substrate binding protein
    T33841VMhypothetical protein P9215_03641
    T6551Mhypothetical protein P9515_03731
    T17641Vhypothetical protein PSSM2_233
    T16281Vhypothetical protein PSSM2_249
    T26841VMT4-like endonuclease
    T21501Vhypothetical protein PSSM4_135
    T14041Mhypothetical protein Pro0463
    T27791VMTalC
    T19721Vhypothetical protein PSSM4_134
    T16891Vhypothetical protein PSSM2_256
    T21571Vhypothetical protein PSSM2_229

    What's this?